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SOIL MICROBIAL ECOLOGY GROUP AT NEIKER-Tecnalia

Dr. Fernando Blanco, Dr. Carlos Garbisu (leader), Dr. Lur Epelde, Dr. Iker Mijangos

RELEVANT PUBLICATIONS

Muñoz-Leoz B, Ruiz-Romera E, Antigüedad I, Garbisu C (2011) Tebuconazole application decreases soil microbial biomass and activity. Soil Biology and Biochemistry 43: 2176-2183 Nuñez-Zofío M, Larregla S, Garbisu C (2011) Application of organic amendments followed by soil plastic mulching reduces the incidence of Phytophthora capsici in pepper crops under temperate climate. Crop Protection 30: 1563-1572 Garbisu C, Alkorta I, Epelde L (2011) Assessment of soil quality using microbial properties and attributes of ecological relevance. Applied Soil Ecology 49: 1-4 Barrutia O, Garbisu C, Epelde L, Sampedro MC, Goicolea MA, Becerril JM (2011) Plant tolerance to diesel minimizes its impact on soil microbial characteristics during rhizoremediation of diesel-contaminated soils. Science of the Total Environment 409: 4087-4093

Barrutia O, Artetxe U, Hernández A, Olano JM, García-Plazaola JI, Garbisu C, Becerril JM (2011) Native plant community growing on an abandoned lead-zinc mining area in northern Spain: implications for phytoremediation and germplasm preservation. International Journal of Phytoremediation 13: 256-270 Soares dos Santos F, Brasil do Amaral-Sobrinho NM, Mazur N, Garbisu C, Barrutia O, Becerril JM (2011) Antioxidative response, phytochelatin production and photoprotective pigments composition of Brachiaria decumbens Stapf plants exposed to Cd and Zn. Quimica Nova 34: 16-24 Muñoz-Leoz B, Antigüedad I, Garbisu C, Ruiz-Romero E (2011) Nitrogen transformations and greenhouse gas emissions from a riparian wetland soil: an undisturbed soil column study. Science of the Total Environment 409: 763-770 Mijangos I, Albizu I, Epelde L, Amezaga I, Mendarte S, Garbisu C (2010) Effects of liming on soil properties and plant performance of temperate mountainous grasslands. Journal Environmental Management 91: 2066-2074 Mijangos I, Garbisu C (2010) Consequences of soil sampling depth during the assessment of the effects of tillage on soil quality: a common oversight. Soil and Tillage Research 109: 169-173 Alkorta I, Becerril JM, Garbisu C (2010) Phytostabilization of metal contaminated soils. Reviews on Environmental Health 25: 135-146 Epelde L, Becerril JM, Kowalchuk GA, Deng Y, Zhou J, Garbisu C (2010) Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities. Applied and Environmental Microbiology 76: 7843-7853 Alkorta I, Becerril JM, Garbisu C (2010) Recovery of soil health: the ultimate goal of soil remediation processes. In: Trends in Bioremediation and Phytoremediation (Editor: G Plaza), Research Signpost, Kerala, India, pp. 1-9 Barrutia O, Garbisu C, Hernández-Allica J, García-Plazaola JI, Becerril JM (2010) Differences in EDTA-assisted metal phytoextraction between metallicolous and nonmetallicolous accessions of Rumex acetosa L. Environmental Pollution 158: 1710-1715 González-Oreja JA, Garbisu C, Mendarte S, Ibarra A, Albizu I (2010) Assessing the performance of nonparametric estimators of species richness in meadows. Biodiversity and Conservation 19: 1417-1436 Epelde L, Becerril JM, Barrutia O, González-Oreja JA, Garbisu C (2010) Interactions between plant and rhizosphere microbial communities in a metalliferous soil. Environmental Pollution 158: 1576-1583 Mijangos I, Albizu I, Garbisu C (2010) Beneficial effects of organic fertilization and no-tillage on fine-textured soil properties under two different forage crop rotations (2010) Soil Science 175: 173-185

Barrutia O, Epelde L, García-Plazaola JI, Garbisu C, Becerril JM (2009) Phytoextraction potential of two Rumex acetosa L. accessions collected from metalliferous and non-metalliferous sites: effect of fertilization. Chemosphere 74: 259264 Mijangos I, Becerril JM, Albizu I, Epelde L, Garbisu C (2009) Effects of glyphosate on rhizosphere soil microbial communities under two different plant compositions by cultivation-dependent and -independent methodologies. Soil Biology and Biochemistry 41: 505-513 Muñoz-Leoz B, Garbisu C, Antigüedad I, Alonso ML, Alonso RM, Ruiz-Romera E (2009) Deltamethrin degradation and soil microbial activity in a riparian wetland soil. Soil Science 174: 220 -228 Epelde L, Mijangos I, Becerril JM, Garbisu C (2009) Soil microbial community as bioindicator of the recovery of soil functioning derived from metal phytoextraction with sorghum. Soil Biology and Biochemistry 41: 1788-1794 Epelde L, Becerril JM, Mijangos I, Garbisu C (2009) Evaluation of the efficiency of a phytostabilization process with biological indicators of soil health. Journal of Environmental Quality 38: 2041-2049 Epelde L, Becerril JM, Alkorta I, Garbisu C (2009) Heavy metal phytoremediation: microbial indicators of soil health for the assessment of remediation efficiency. In: Advances in Applied Bioremediation. Series: Soil Biology 17 (Editor: A. Singh, R.C. Kuhad, O.P. Ward), Springer-Verlag, Berlin, Germany, pp. 299-313 Rodríguez-Loinaz G, Onaindia M, Amezaga I, Mijangos I, Garbisu C (2008) Relationship between vegetation diversity and soil functional diversity in native mixedoak forests. Soil Biology and Biochemistry 40: 49-60 Hernández-Allica J, Becerril JM, Garbisu C (2008) Assessment of the phytoextraction potential of high biomass crop plants. Environmental Pollution 152: 32-40 Epelde L, Becerril JM, Hernández-Allica J, Barrutia O, Garbisu C (2008) Functional diversity as indicator of the recovery of soil health derived from Thlaspi caerulescens growth and metal phytoextraction. Applied Soil Ecology 39: 299- 310 González-Oreja J, Rozas MA, Alkorta I, Garbisu C (2008) Dendroremediation of heavy metal polluted soils. Reviews on Environmental Health 23: 223-234 Epelde L, Hernández-Allica J, Becerril JM, Blanco F, Garbisu C (2008) Effects of chelates on plants and soil microbial community: comparison of EDTA and EDDS for lead phytoextraction. Science of the Total Environment 401: 21-28 Hernández-Allica J, Garbisu C, Barrutia O, Becerril JM (2007) EDTA-induced heavy metal accumulation and phytotoxicity in cardoon plants. Environmental and Experimental Botany 60: 26-32

Rozas MA, Alkorta I, Garbisu C (2006) Phytoextraction and phytofiltration of arsenic. Reviews on Environmental Health 21: 43-56 Hernández-Allica J, Becerril JM, Zárate O, Garbisu C (2006) Assessment of the efficiency of a metal phytoextraction process with biological indicators of soil health. Plant and Soil 281: 147-158 Alkorta I, Epelde L, Mijangos I, Amezaga I, Garbisu C (2006) Bioluminescent bacterial biosensors for the assessment of metal toxicity and bioavailability in soils. Reviews on Environmental Health 21: 139-152 Hernández-Allica J, Garbisu C, Becerril JM, Barrutia O, García-Plazaola JI, Zhao FJ, McGrath SP (2006) Synthesis of low molecular weight thiols in response to Cd exposure in Thlaspi caerulescens. Plant, Cell and Environment 29 : 1422-1429 Santos FS, Hernández-Allica J, Becerril JM, Amaral-Sobrinho N, Mazur N, Garbisu C (2006) Chelate-induced phytoextraction of metal polluted soils with Brachiaria decumbens. Chemosphere 65 : 43-50 Mijangos I, Pérez R, Albizu I, Garbisu C (2006) Effects of fertilization and tillage on soil biological parameters. Enzyme and Microbial Technology 40: 100-106 Hernández-Allica J, Zárate O, Blanco F, Becerril JM, Garbisu C (2006) Activity of soil microbial communities to monitor the efficiency of a metal phytoremediation process with Thlaspi caerulescens. In: Modern Multidisciplinary Applied Microbiology. Exploiting Microbes and Their Interactions (Editor: A. Mendez-Vilas), Wiley-VCH, Weinheim, Germany, pp. 473-477 Onaindia M, Amezaga I, Garbisu C, García-Bikuña B (2005) Aquatic macrophytes as biological indicators of environmental conditions of rivers in north-eastern Spain. Annales de Limnologie ­ International Journal of Limnology 41: 175-182 Alkorta I, Albizu I, Amezaga I, Onaindia M, Buchner V, Garbisu C (2004) Climbing a ladder: a step-by-step approach to understanding the concept of agroecosystem health. Reviews on Environmental Health 19: 141-159 Onaindia M, Dominguez I, Albizu I, Garbisu C, Amezaga I (2004) Vegetation diversity and vertical structure as indicators of forest disturbance. Forest Ecology and Management 195: 341-354 Alkorta I, Hernández-Allica J, Garbisu C (2004) Plants against the global epidemic of arsenic poisoning. Environment International 30: 949-951 Amezaga I, Mendarte S, Albizu I, Besga G, Garbisu C, Onaindia M (2004) Grazing intensity, aspect, and slope effects on limestone grassland structure. Journal of Range Management 57: 606-612 Alkorta I, Hernández-Allica J, Becerril JM, Amezaga I, Albizu I, Onaindia M, Garbisu C (2004) Chelate-enhanced phytoremediation of soils polluted with heavy metals. Reviews in Environmental Science and Bio/Technology 3: 55-70

Alkorta I, Hernández-Allica J, Becerril JM, Amezaga I, Albizu I, Garbisu C (2004) Recent findings on the phytoremediation of soils contaminated with environmentally toxic heavy metals and metalloids such as zinc, cadmium, lead, and arsenic. Reviews in Environmental Science and Bio/Technology 3: 71-90 Nortcliff S, Garbisu C (2004) Organic matter, biodiversity (Volume VI: Research, Sealing and Cross-Cutting Issues. Taskgroup 3: Organic Matter, Biodiversity). In: VanCamp L, Bujarrabal B, Gentile A-R, Jones RJA, Montanarella L, Olazabal C, Selvaradjou S-K. Reports of the Technical Working Groups Established under the Thematic Strategy for Soil Protection. EUR 21319 EN/6. Office for Official Publications of the European Communities, Luxembourg, Volumen: VI, pp. 755-764 Hernández-Allica J, Barrutia O, Becerril JM, Garbisu C (2003) EDTA reduces the physiological damage of lead on cardoon plants grown hydroponically. Journal de Physique IV France 107: 613-616 Kim Y-B, Garbisu C, Pickering IJ, Prince RC, George GN, Cho M-J, Wong JH, Buchanan BB (2003) Thioredoxin h overexpressed in barley seeds enhances selenite resistance and uptake during germination and early seedling development. Planta 218: 186-191 Alkorta I, Albizu I, Garbisu C (2003) Biodiversity and agroecosystems. Biodiversity and Conservation 12: 2521-2522 Alkorta I, Aizpurua A, Riga P, Albizu I, Amézaga I, Garbisu C (2003) Soil enzyme activities as biological indicators of soil health. Reviews on Environmental Health 18: 65-73 Alkorta I, Amezaga I, Albizu I, Aizpurua A, Onaindia M, Buchner V, Garbisu C (2003) Molecular microbial biodiversity assessment: a biological indicator of soil health. Reviews on Environmental Health 18: 131-151 Garbisu C, Alkorta I (2003) Basic concepts on heavy metal soil bioremediation. The European Journal of Mineral Processing and Environmental Protection 3: 58-66 Garbisu C, Hernández-Allica J, Barrutia O, Alkorta I, Becerril JM (2002) Phytoremediation: a technology using green plants to remove contaminants from polluted areas. Reviews on Environmental Health 17: 173-188 Garbisu C, Alkorta I (2001) Phytoextraction: a cost-effective plant-based technology for the removal of metals from the environment. Bioresource Technology 77: 229-236 Alkorta I, Garbisu C (2001) Phytoremediation of organic contaminants in soils. Bioresource Technology 79: 273-276 Garbisu C, Alkorta I, Llama MJ, Serra JL (2000) Immobilization of living microalgae and their use for inorganic nitrogen and phosphorus removal from water. In: Environmental Biotechnology and Cleaner Bioprocesses (Editors: E.J. Olguín, G. Sánchez, E. Hernández), Taylor & Francis, London, UK, pp. 107-121

Garbisu C, Alkorta I (1999) Utilization of genetically engineered microorganisms (GEMs) for bioremediation. Journal of Chemical Technology and Biotechnology 74: 599-606 Garbisu C, Carlson D, Adamkiewicz M, Yee BC, Wong JH, Resto E, Leighton T, Buchanan BB (1999) Morphological and biochemical responses of Bacillus subtilis to selenite stress. BioFactors 10 : 311-319 Garbisu C, Alkorta I, Llama MJ, Serra JL (1998) Aerobic chromate reduction by Bacillus subtilis. Biodegradation 9: 133-141 Garbisu C, Alkorta I (1997). Bioremediation: principles and future. Journal of Clean Technology, Environmental Toxicology and Occupational Medicine 6: 351-366 Prieto B, Pardo MA, Garbisu C, Llama MJ, Serra JL (1997) Phosphate uptake by phosphorus-starved cells of the cyanobacterium Phormidium laminosum. World Journal of Microbiology and Biotechnology 13: 699-705 Garbisu C, Alkorta I, Carlson DE, Leighton T, Buchanan BB (1997) Selenium bioremediation potential of indigenous microorganisms from industrial activated sludge. Microbiología SEM 13: 437-444 Garbisu C, Llama MJ, Serra JL (1997) Effect of heavy metals on chromate reduction by Bacillus subtilis. Journal of General and Applied Microbiology 43: 369-371 Combs GF Jr., Garbisu C, Yee BC, Yee A, Carlson DE, Smith NR, Magyarosy AC, Leighton T, Buchanan BB (1996) Bioavailability of selenium accumulated by selenitereducing bacteria. Biological Trace Element Research 52: 209-225 Garbisu C, Ishii T, Leighton T, Buchanan BB (1996) Bacterial reduction of selenite to elemental selenium. Chemical Geology 132: 199-204 Garbisu C, Gonzalez S, Yang W-H, Yee BC, Carlson DL, Yee A, Smith NR, Otero R, Buchanan BB, Leighton T (1995) Physiological mechanisms regulating the conversion of selenite to elemental selenium by Bacillus subtilis. BioFactors 5: 29-37 Garbisu C, Ishii T, Smith NR, Yee BC, Carlson DE, Yee A, Buchanan BB, Leighton T (1995) Mechanisms regulating the reduction of selenite by aerobic Gram (+) and (-) bacteria. In: Bioremediation of Inorganics. Bioremediation (Editors: R.E. Hinchee, J.L. Means, D.R. Burris). 3rd International In Situ and On-Site Bioreclamation Symposium (April, 1995, San Diego, CA), Volumen: 3 (10) , Battelle Press, Columbus, Ohio, pp. 125-131 Garbisu C, Hall DO, Llama MJ, Serra JL (1994) Inorganic nitrogen and phosphate removal from water by free-living and polyvinyl-immobilized Phormidium laminosum in batch and continuous-flow bioreactors. Enzyme and Microbial Technology 16: 395401

Garbisu C, Hall DO, Serra JL (1993) Removal of phosphate by foam-immobilized Phormidium laminosum in batch and continuous-flow bioreactors. Journal of Chemical Technology and Biotechnology 57: 181-189 Garbisu C, Hall DO, Serra JL (1992) Nitrate and nitrite uptake by free-living and immobilized N-starved cells of Phormidium laminosum. Journal of Applied Phycology 4: 139-148 Garbisu C, Gil JM, Bazin MJ, Hall DO, Serra JL (1991) Removal of nitrate from water by foam-immobilized Phormidium laminosum in batch and continuous-flow bioreactors. Journal of Applied Phycology 3: 221-234

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